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◯ Introduction
We perform genome decoding for each variety that shows phenotypic differences in quality such as rice taste, environmental stress, or disease resistance.
✓ Secure high-quality genome sequences for each breed that meet the genome analysis performance evaluation standards
✓ Discovery of new genes related to major breeding that could not be confirmed compared to IRGSP 1.0
✓ Identification of presence-absence variation (PAV), a breeding-related gene that contributes to genetic diversity and has a significant impact on phenotypic variation
✓ Secure specific and common genes for each variety and analyze evolution patterns of genes related to expansion and breeding
Discovery of markers for early selection of individuals according to breeding goals such as multiplicity and disease resistance
◯ Genome Browser
http://nabic.rda.go.kr/post_jbrowse.do?data=K_RICE
◯ Genome statistics
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기호벼(Giho)
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밀양23(Milyang23)
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삼광(Samgkwnag)
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오대(Odae)
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참동진(Chamdongjin)
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No. Contigs
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194
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33
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225
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224
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37
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No. scaffolds (pre-test)
- Reference: XL628S
(Zhang et al., Plant Biotechnology Journal, 2022)
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12 chrs +
160 unlocalized
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12 chrs +
8 unlocalized
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12 chrs +
203 unlocalized
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12 chrs +
202 unlocalized
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12 chrs +
14 unlocalized
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Total size (bp)
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390,247,117
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395,802,071
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391,619,564
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390,349,611
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383,559,072
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Avg. length (bp)
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2,011,583.08
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11,994,002.15
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1,740,531.40
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1,742,632.19
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10,366,461.41
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Min. length (bp)
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15,699
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20,478
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10,377
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11,679
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15,340
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Max. length (bp)
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43,771,465
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44,821,825
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43,927,368
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43,973,068
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43,785,576
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N50
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27,280,009
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30,979,570
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31,684,489
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30,548,822
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31,715,650
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N (%)
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0.00
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0.00
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0.00
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0.00
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0.00
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GC (%)
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43.71
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43.64
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43.71
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43.70
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43.60
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Complete BUSCOs
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4826
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4825
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4828
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4822
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4824
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Complete & Single-Copy BUSCOs
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4715
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4717
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4718
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4714
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4714
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Complete & Duplicated BUSCOs
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111
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108
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110
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108
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110
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Fragmented BUSCOs
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12
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12
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11
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12
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11
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Missing BUSCOs
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58
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59
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57
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62
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61
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Number of telomeres
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16
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19
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14
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14
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15
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Number of genes
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63,887
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65,427
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64,174
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64,223
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64,371
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◯ Wokrflow - Chamdongjin[참동진] - Others [giho, milyang23, samgwang, odae (기호, 밀양23, 삼광, 오대) ]
Contacts
Dr. Jeong-Gu KIM (email:jkim5aug@korea.kr)
Reference Publication
(not yet)
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